Case study · Scientific Platform Modernization

A scientific analysis platform, from fragile to production-grade in 33 days.

A venture-backed biotech ran its day-to-day science on an internal analysis platform that had quietly become hard to change and easy to break. In just over a month, I turned it into something the team could deploy, scale, and trust.

Client
Venture-backed biotechnology startup
Engagement
Platform modernization
Duration
33 days
The modernized scientific analysis platform
The situation

A platform the science depended on, that no one could safely change.

The platform was critical to everyday scientific work, but years of accumulated technical debt had made it fragile. There were no tests and no CI, no authentication or user tracking, and no real separation between development and production. Deployments were done by hand, large jobs failed often, and all the compute was pinned to fixed infrastructure.

The team needed it to become reliable, scalable, and maintainable, without pausing the science to get there.

Where things stood
  • No automated testing or CI
  • No authentication or user tracking
  • No split between dev and production
  • Limited operational visibility
  • Manual deployments
  • Compute locked to fixed infrastructure
  • Frequent failures on large jobs
What the team needed
  • A platform they could rely on
  • Faster, safer engineering
  • Less operational risk
  • Compute that scales with demand
  • A foundation to build on
What I delivered

Five fronts, in just over a month.

Engineering foundations

  • 700+ automated tests
  • Over 50% code coverage
  • Validation on every pull request
  • A structured release process

For the first time, the platform could be changed safely and with confidence.

Platform reliability

  • Silent failures eliminated
  • Structured logging
  • End-to-end operational visibility
  • Health monitoring and deploy automation

Engineers could diagnose issues in minutes instead of investigating by hand.

Infrastructure modernization

  • Autoscaling CPU and GPU workers
  • Queue-based asynchronous processing
  • Infrastructure validation tooling
  • Environment-specific configuration

Compute now scales with demand instead of hitting a fixed ceiling.

Security and access control

  • Single sign-on and authentication
  • User activity tracking
  • Secret management
  • Full environment isolation

Development and production are now completely separated.

Performance

  • Peak memory cut by roughly 77%
  • Large processing jobs stabilized
  • More reliable job queue
  • Failure recovery built in

The biggest jobs, the ones that used to fail outright, now finish.

Measurable outcomes

Before and after.

MetricBeforeAfter
Automated tests0700+
Code coverage0%52%+
AuthenticationNoneSSO
Environments12 isolated
DeploymentManualAutomated
Worker scalingFixed capacityAutoscaling
Peak memory usage22+ GB5 GB
40+ scientists
rely on the platform day to day
~800hrs/mo
of scientific time returned to the team
~3,000
backlogged images now processable
77%
lower peak memory on the largest jobs
The outcome

A fragile system became a platform the team can build on.

In just over a month, the platform went from a fragile, manually operated system to a production-grade scientific platform: automated testing, scalable infrastructure, real operational visibility, deployment automation, and modern engineering practices throughout.

The team got immediate operational relief, and a foundation that future work can stand on rather than fight against.

Let’s talk

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